Curriculum Vitae
TANJA
BEKHUIS, PhD, MS, MLIS, AHIP (Distinguished)
TCB Research & Indexing LLC
EDDA Analytics Group
www.tcbinfosci.com
Contact: tanja.bekhuis@tcbinfosci.com
Keywords: Library and information
sciences; biomedical and dental informatics; systematic, scoping, and rapid literature
review methods; knowledge representation; taxonomies and ontologies;
information retrieval and extraction; complex search strategies; natural
language processing; text mining; machine learning; mixed methods; qualitative
research; quantitative research; digital scholarship; scholarly communication;
writing, editing, and indexing; innovation.
EDUCATION and TRAINING
GRADUATE EDUCATION
| Institution |
Degree
|
Discipline
|
University
of Miami
Coral Gables, Florida, USA
|
MS
|
Educational
Research
|
School
of Information Sciences, University of Pittsburgh,
Pittsburgh, Pennsylvania, USA
|
MLIS
|
Library
and Information Sciences
|
Thurstone
Psychometric Laboratory, University of North Carolina
Chapel
Hill, North Carolina, USA
|
PhD
|
Quantitative
Psychology
|
POSTDOCTORAL SCHOLAR (Funded by NLM
and NIDCR)
| Institution | Discipline |
Department
of Biomedical Informatics
School
of Medicine
University
of Pittsburgh
Pittsburgh,
Pennsylvania, USA
|
Dental and Biomedical Informatics
|
APPOINTMENTS and POSITIONS
ACADEMIC
Years
|
Institution
|
Title
|
2008–2010
|
Center for Dental Informatics, School of
Dental Medicine, and Department of Biomedical Informatics, School of
Medicine, University of Pittsburgh, Pittsburgh, PA, USA
|
NLM/NIDCR
Postdoctoral Scholar
|
2009 Summer
|
Communications
Engineering Branch, Lister Hill National Center for Biomedical
Communications, US National Library of Medicine, Bethesda, MD, USA
|
NLM Rotation for Medical Informatics Scholar
|
2010–2012
|
Department of Biomedical Informatics,
School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA
|
Research Associate
|
2012–2016
|
Department of Biomedical Informatics,
School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA
|
Assistant Professor
|
2013–2016
|
Department of
Dental Public Health, School of Dental Medicine, University of Pittsburgh,
Pittsburgh, PA, USA
|
Assistant Professor
(secondary appointment)
|
2014–2016
|
Center for
Informatics in Oral Health Translational Research, School of Dental Medicine,
University of Pittsburgh, Pittsburgh, PA, USA
|
Co-Founder and Director of Translational
Research Methods
|
2015–2016
|
School of
Information Sciences, University of Pittsburgh, Pittsburgh, PA, USA
|
Assistant Professor
(secondary appointment)
|
2016–present
|
Department of Biomedical Informatics,
School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA
|
Adjunct Faculty
|
NON-ACADEMIC
Years
|
Organization
|
Title
|
2007–2010
|
Centre
for Reviews & Dissemination, University of York, UK. Wrote structured
abstracts with commentary on systematic reviews of healthcare interventions
for the Database of Abstracts of Reviews of Effects (DARE), formerly part of
the Cochrane Library.
|
Evaluator
|
2008
|
Form
& Content Media, Ltd. Edited articles on biomedical applications in
optics and photonics for SPIE, an international society for scientists and
engineers.
|
Technical Editor
|
2012–present
|
Evidence in Documents, Discovery and
Analytics (EDDA) Group™, a division of TCB Research & Indexing LLC. Design
and conduct studies of documents, such as scientific articles,
abstracts, and e-mail messages. Use various language technologies, e.g.,
natural language processing and text mining.
|
Principal Scientist
|
2016–present
|
TCB Research & Indexing LLC. Write, edit, and index books,
technical reports, scientific articles, and grant proposals. Consultant for
research methods, text analytics, and terminology development.
|
CEO and Founder
|
HONORS
National
Institute of Mental Health, Predoctoral Fellow
|
|
Frank
Porter Graham Innovative Research Award, University of North Carolina at
Chapel Hill |
|
Smith Graduate Research Award, University of North Carolina at
Chapel Hill
|
|
L.
L. Thurstone Psychometric Laboratory Award, University of North Carolina at
Chapel Hill |
|
AERA
grant, Institute on Statistical Analysis for Education Policy, Atlanta,
Georgia
|
|
NLM Rotation for Medical Informatics, Communications
Engineering Branch, Lister Hill National Center for Biomedical
Communications, US National Library of Medicine, Bethesda, Maryland,
Postdoctoral Scholar
|
|
National
Library of Medicine / National Institute of Dental and Craniofacial Research,
Pittsburgh Biomedical Informatics Training Program, Postdoctoral Scholar
|
|
NIH/NLM
Pathway to Independence Award (K99/R00)
|
|
Academy
of Health Information Professionals (AHIP), Distinguished member
|
|
NSF
Innovation Corps (I-Corps) at Carnegie Mellon University.
| |
CONTINUING EDUCATION (since 2007)
Workshop on Web-based analysis, including analysis of DNA &
protein sequences, MapViewer, Entrez Gene, & unmasking genes in human DNA,
National Center for Biotechnology Information, Bethesda, MD.
On writing structured abstracts/reviews for the Database of
Abstracts of Reviews of Effects (DARE), Centre for Reviews & Dissemination,
University of York, UK (summer).
Workshop on completing a Cochrane systematic review, Cochrane Eyes
and Vision Group, Fort Lauderdale, Florida (3 days).
Authorship: Ethical Issues along the Path to Publication, Office
of Academic Career Development, Health Sciences, University of Pittsburgh.
Research Webinar Series: Knowledge Synthesis; Review Manager 5;
Assessing and Interpreting Reported Meta-regression Analyses, Canadian Cochrane
Network and Centre.
An Introduction to Clinical Natural Language Processing, Part 1,
American Medical Informatics Association (AMIA) tutorial.
An Introduction to Clinical Natural Language Processing, Part 2:
Interactive Demonstrations of Fundamental Concepts with Available Open Source
Tools, American Medical Informatics Association (AMIA) tutorial.
An Introduction to Data Mining Principles and Practice, American
Medical Informatics Association (AMIA) tutorial.
Introduction to Ontology Engineering and the Web Ontology Language
(OWL), Stanford Protégé-OWL short course, Stanford University (several days).
Natural Language Processing: State of the Art, Future Directions
and Applications for Enhancing Clinical Decision-Making, National Institutes of
Health workshop, Bethesda, MD.
Responsible Conduct of Research, Symposium for Emerging Researchers:
Becoming a More Effective Research Mentor, Office of Academic Career
Development, Health Sciences, University of Pittsburgh.
Developing Competitive Grant Applications, Office of Academic
Career Development, Health Sciences, University of Pittsburgh.
Ontology and Imaging Informatics: Third Clinical and Translational
Science Ontology Workshop, National
Center for Ontological Research, Buffalo, NY (several days).
Corpus Linguistics: Method, Analysis, Interpretation, a
FutureLearn MOOC, Tony McEnery, PhD, Department of Linguistics and English
Language, Lancaster University, Lancaster, UK (8 weeks).
Practices for Hiring and Mentoring Postdocs, Office of Academic
Career Development, Health Sciences, University of Pittsburgh.
NSF Innovation Corps (I-Corps) at Carnegie Mellon University
(year-long).
Biomedical Named-Entity Recognition: An Overview of MetaMap.
François-Michel Lang, Principal Scientific Systems Developer, Lister Hill
National Center for Biomedical Communications, US National Library of Medicine
(webinar).
Grey Horizons: Grey Literature Searching for New and Emerging
Health Technologies. CE400. Joint meeting of the Medical Library Association
(MLA), Canadian Health Libraries Association (CHLA/ABSC), and International
Clinical Librarian Conference (ICLC), Toronto, Canada (4 hours).
ABCs of Research Impact: Altmetrics, Bibliometrics, and Citations.
CE704. Joint meeting of Medical Library Association (MLA), Canadian Health
Libraries Association (CHLA/ABSC), and International Clinical Librarian
Conference (ICLC), Toronto, Canada (4 hours).
Competitive Intelligence (CI): Sources, Strategies and Techniques.
Special Libraries Association (SLA) 2016 Annual
Conference, Philadelphia, PA (4 hours).
Bringing Rigor and Reproducibility to
Research: A Symposium for Health Sciences. University of
Pittsburgh Health Sciences Library
System, Pittsburgh, PA (4 hours).
Linking Locally: A Technical Tour of the UNLV LOD [Linked Open
Data] Project. ASIS&T Arts and Humanities SIG (webinar).
Introduction
to Linked Data and the Semantic Web, a FutureLearn MOOC, Elena Simperl, PhD, Web
and Internet Science Group, University of Southampton, UK (3 weeks).
|
Managing
Mature Taxonomies. SLA Taxonomy Division [webinar].
|
Digital
Humanities Approaches to Text Analysis, ULS / iSchool Digital Scholarship
Workshop, University of Pittsburgh, PA (2 hours).
|
Multimedia Digital Narratives, ULS / iSchool Digital
Scholarship Workshop, University of Pittsburgh, PA (2 hours).
|
Synonyms, Alternative Labels, and Non-preferred Terms. SLA Taxonomy Division [webinar]. |
PUBLICATIONS
Selected Academic Research Articles
Bekhuis T.
Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy [in top ten of most accessed articles]. Biomedical
Digital Libraries, 2006, 3:2. PMCID: PMC1459187.
Bekhuis T, Thyvalikakath T, Oliver R. Interventions for treating
ameloblastomas of the jaws [protocol]. Cochrane Database of Systematic Reviews,
2009, Issue 4. Art. No.: CD003975.
doi:
1002/14651858.CD003975.pub2.
Bekhuis T.
Music therapy may reduce pain and anxiety in children undergoing medical and
dental procedures [invited evaluation of a
systematic review]. Journal of Evidence-based Dental Practice, 2009,
9(4), 213-14. doi:10.1016/j.jebdp.2009.03.002. PMCID: PMC2778574.
Spallek H, Song
M, Polk DE, Bekhuis T,
Frantsve-Hawley J, Aravamudhan K. Barriers to implementing evidence-based
clinical guidelines: a survey of early adopters. Journal of Evidence-based
Dental Practice. 2010, (10)4, 195-206. PMCID: PMC3011934.
Bekhuis T, Demner-Fushman
D. Towards automating the initial screening phase of a systematic review. Studies
in Health Technology and Informatics. 2010, 160(Pt 1):146-50. PMID: 20841667.
Bekhuis T.
Chlorhexidine varnish may prevent dental caries in children and adolescents [invited evaluation of a systematic review].
Journal of Evidence-based Dental Practice, 2011, 11(2):84-6. PMID: 21605831.
Bekhuis T,
Kreinacke M, Spallek H, Song M, O'Donnell AJ. Using natural language processing
to enable in-depth analysis of clinical messages posted to an Internet mailing
list: a feasibility study. Journal of Medical Internet Research. 2011,
13(4):e98. PMCID: PMC3236668.
Bekhuis T,
Demner-Fushman D. Screening nonrandomized studies for medical systematic
reviews: a comparative study of classifiers. Artificial Intelligence in Medicine.
2012 Jul;55(3):197-207. Epub 2012 Jun 5. PMCID: PMC3393813. [Featured in the AHRQ Scientific
Resource Center Methods Library,
November 2012.]
Bekhuis T,
Demner-Fushman D, Crowley RS. Comparative effectiveness research designs in
MeSH and Emtree: an evaluation of coverage. JMLA: Journal of the Medical Library
Association. 2013;101(2):92-100. PMCID: PMC3634392. [Featured
in the AHRQ Scientific Resource Center Methods Library, May 2013.]
Song M,
O'Donnell JA, Bekhuis T, Spallek H.
Are dentists interested in the oral-systemic disease connection? A qualitative
study of an online community of 450 practitioners. BMC Oral Health. 2013 Nov
21;13(1):65. [Epub ahead of print] PMCID: PMC3924341. [Highly
accessed article; also featured in British Dental Journal.
2013; 215(11): 545, News section, online: 6
December 2013. doi:10.1038/sj.bdj.2013.1152].
Bekhuis T,
Tseytlin E, Mitchell K, Demner-Fushman D. Feature engineering and a proposed
decision-support system for systematic reviewers of medical evidence. PLoS One.
Epub 2014 Jan 27;
9(1):e86277. doi:10.1371/journal.pone.0086277. PMCID: PMC3903545. [Featured in the AHRQ Scientific Resource Center Methods Library,
March 2014].
Bekhuis T. Mentors
and tormentors on the road to informatics [invited essay].
JMLA: Journal of the Medical Library Association. 102(2), 2014 Apr;102(2):67-8.
doi: 10.3163/1536-5050.102.2.001. PMCID:
PMC3988775.
Bekhuis T, Kim K, Valappil B, Spallek H. Adapting the Scottish PRIME Fissure
Sealant Questionnaire for implementation research in the United States: lessons
learned. APA PsycEXTRA, American Psychological Association (APA). 2014. doi:
10.1037/e502572014-001.
Bramer WM,
Holland L, Mollema J, Hannon T, Bekhuis
T. Removing duplicates in retrieval sets from electronic databases:
comparing the efficiency and accuracy of the Bramer method with other methods
and software packages. Proceedings of the 14th European Association for Health
Information and Libraries (EAHIL) Conference, 57-9. Rome, Italy, June 11-13,
2014.
Frazier JJ,
Stein CD, Tseytlin E, Bekhuis T. Building a gold standard to
construct search filters: a case study with biomarkers for oral cancer. JMLA: Journal
of the Medical Library Association. 2015 Jan;103(1):346-354.
doi:10.3163/1536-5050.103.1.005. PMCID: PMC4279929.
Bekhuis T. Keywords,
discoverability, and impact [invited commentary].
JMLA: Journal of the Medical Library Association. 2015 Jul;103(3):119-20. doi: 10.3163/1536-5050.103.3.002.
PMCID: PMC4511049.
Faith A, Bekhuis T. HTA Database Canadian Repository [electronic
resource review]. JMLA: Journal of the Medical Library Association. 2015 Oct;103(4):239-40. doi:
10.3163/1536-5050.103.4.021. PMCID: PMC4613395.
Bekhuis T, Tseytlin E, Mitchell KJ. A prototype for a hybrid system to
support systematic review teams: a case study of organ transplantation. IEEE
International Conference on Bioinformatics and Biomedicine (BIBM) Proceedings. Nov
2015; 940-47. doi: 10.1109/BIBM.2015.7359810. PMCID: PMC4742277. [Featured in the AHRQ Scientific Resource Center Methods Library,
February 2016].
Straub-Morarend C, Wankiiri-Hale C, Blanchette D, Lanning, SK, Bekhuis T, Smith B, Brodie, AJ,
Oliveira D, Handysides RA, Dawson D, Spallek H. U.S. Dental students’
evidence-based practice knowledge, perceptions and behavior: a cross-sectional
study. Journal of Dental Education. 2016; 80(4):430-38.
Bramer WM,
Giustini D, de Jonge GB, Holland L, Bekhuis
T. Deduplication
of database search results for systematic reviews in EndNote. JMLA: Journal of the Medical Library Association. 2016 Jul;104(3):240-3.
doi: 10.3163/1536-5050.104.3.014. PMID: 27366130.
McIvor, WR, Banergee A, Boulet JR, Weinger MB, Bekhuis T, Tseytlin E, Torsher L,
Simulation‑Based Assessment Research Group. A taxonomy of scenario delivery and
documentation deviations during high-fidelity simulations. Simulation in
Healthcare. 2017 Feb;12(1):1-8. PMID: 28146449.
Castro SM, Tseytlin E, Medvedeva O,
Mitchell KJ, Visweswaran S, Bekhuis T,
Jacobson RS. Automated annotation and classification of BI-RADS assessment from
radiology reports. Journal of Biomedical Informatics. Journal of Biomedical
Informatics. 2017 May;69:177-187. doi: 10.1016/j.jbi.2017.04.011. PMID:
28428140.
Bekhuis T, Kreinacke M, Spallek H, Song M. Using the Natural Language
Toolkit to reduce the number of messages for in-depth content analyses: a case
study. AMIA 2010 Annu Symp Proc, 981. Washington DC: American Medical
Informatics Association.
Bekhuis T,
Stein CD. Feasibility scans could improve prioritization and selection of
systematic review topics. 21st Cochrane Colloquium; 2013 Sep 19 - 23; Quebec,
Canada. In Cochrane Database Syst Rev Suppl, 69 (2013). Wiley & Sons.
doi:10.1002/14651858.CD201300.
Frazier JJ, Stein CD,
Bekhuis T. Prognostic biomarkers of oral squamous cell carcinoma: towards
development of a gold standard. DBMI Annual Training Program Retreat,
University of Pittsburgh, Pittsburgh, PA, Aug 22-23, 2013.
Balasubramani H, Reitmeyer KL, Sadeghian
R, Bekhuis T, Ketchum AM, Foust JE,
Handler SM. Scoping review of telemedicine in nursing
homes [extended abstract appears in “Creating a pipeline of talent for
informatics: STEM initiative for high school students in computer science,
biology, and biomedical informatics”]. J Path Inform 2014 Mar;5(12). doi:10.4103/2153‑3539.129448.
PMID:24860688.
Frazier J, Stein C, Tseytlin E, Mitchell KM, Bekhuis T. Finding and visualizing information about potential
prognostic biomarkers of oral squamous cell carcinoma: a pathology informatics
study. Oral Surg Oral Med Oral Pathol Oral Radiol.118(6):e193-e4. doi:
10.1016/j.oooo.2014.05.097. [Presented at the American Academy of Oral and
Maxillofacial Pathology (AAOMP) Annual Meeting, St. Augustine, FL, April 25-30,
2014.]
Frazier JJ, Stein CD, Tseytlin
E, Bekhuis T. A gold standard
dataset with records of studies on potential prognostic biomarkers for oral
squamous cell carcinoma. DBMI Annual Training Program Retreat, University of
Pittsburgh, Pittsburgh, PA, Aug 21-22, 2014.
Faith A, Tseytlin E, Bekhuis T.
Development of the EDDA Study Design Terminology: enhancing retrieval of
clinical and bibliographic records in dispersed repositories. DC-2014: International Conference on Dublin Core and Metadata
Applications, Austin, TX, Oct 8-11, 2014.
Schneider J, Bekhuis T. Tracking evidentiary claims in a systematic review: a
proposed case study of oral pain relief. National Institute of Dental and
Craniofacial Research Trainee conference, co‑located with the annual conference
of the American Association for Dental Research, Los Angeles, CA, March 16‑19,
2016.
Hoang L, Bekhuis T, Schneider J. Towards automatic data extraction from
clinical research reports: a case study of a systematic review of oral pain
relief. Research Showcase, School of Information Sciences, University of
Illinois at Urbana-Champaign, Champaign, Illinois, October 24, 2016.
Selected
Technical Reports
Bekhuis T. How to use EndNote 7 to create a library of references from
Communications & Mass Media Index (CMMI). Social Sciences Library, Paterno
Library, Penn State University, University Park, PA. 2004.
Bekhuis T. Sources for media comparisons by country [annotated
telecommunications bibliography]. Social Sciences Library, Paterno Library,
Penn State University, University Park, PA. 2004.
Kreinacke M, Bekhuis T,
Spallek H, Song M, O'Donnell JA. Preprocessing messages posted by dentists to
an Internet mailing list: a report of methods developed for a study of clinical
content. Technical report no. 09262011. University of Pittsburgh School of
Medicine, Pittsburgh, PA. 2011. Available at http://d‑scholarship.pitt.edu/14247/.
Bekhuis T,
Dziabiak M. Google Translate: a useful tool for librarians and systematic
reviewers [technology column]. MLA News. November/December 2011.
Bekhuis T, EDDA Analytics Group™. Library workshops in support of data-driven research in top NIH‑ and
NSF-funded universities [no. 00170205]. Pittsburgh, PA, USA: TCB Research &
Indexing LLC. February 2017. https://doi.org/10.13140/RG.2.2.10522.85445.
Selected Book Reviews
Appeared
in PsycCRITIQUES [formerly Contemporary Psychology: APA Review of Books].
Bekhuis T. The View from Mount Olympus [review of A Telescope on Society:
Survey Research and Social Science at the University of Michigan and Beyond].
2004, 49(11), 4 pp.
Bekhuis T. Building Better Measures [review of Constructing Measures: An
Item Response Modeling Approach]. 2005, 50(18), 4 pp.
Bekhuis T. Mapping Invisible Structure [review of Modern Multidimensional
Scaling: Theory and Applications, Second Edition], 2006, 51(22), 4 pp.
Bekhuis T. Misery and the Digital Divide [review of From Rural Village to
Global Village: Telecommunications for Development in the Information Age].
2007, 3 pp.
Bekhuis T,
Wade TJ. Inside Out [review of Mental Health and Social Space: Towards
Inclusionary Geographies?], 2008, 53(38), 3 pp.
Appeared in CHOICE: Current Reviews
for Academic Libraries.
Bekhuis T. Review of Psychologists' Desk Reference, Second Edition, May
2005.
Bekhuis T. Review of Making Sense: A Student's Guide to Research and
Writing / Social Sciences, Updated Second Edition, October 2005.
Bekhuis T. Review of Handbook of International Disaster Psychology [4
vols.], September 2006.
Bekhuis T. Review of Injury and Violence Prevention, June 2007.
Bekhuis T. Review of Dictionary of Psychological Testing, Assessment and
Treatment, Second Edition, July 2008.
Selected Essays in Reference
Books
Bekhuis
T. "Suśruta, Indian Physician, Writes Medical Compendium.” In
Great Events from History: The Ancient World. Pasadena, CA: Salem Press, 2004,
pp. 351-53.
Bekhuis
T. “Collective Guilt.” In Ethics, Revised Edition. Pasadena, CA:
Salem Press, 2005, pp. 269-70.
Bekhuis
T. “Land Mines.” In Ethics, Revised Edition. Pasadena, CA: Salem
Press, 2005, pp. 822-823.
Bekhuis
T. "Universal Human Rights." In Encyclopedia of Gender
and Society. Thousand Oaks, CA: SAGE Publications, 2008. doi: http://dx.doi.org/10.4135/9781412964517.n435
Bekhuis
T. "Embolization." In Salem Encyclopedia of Health and
Medicine: CANCER. Pasadena, CA: Salem Press, 2009. pp. 402-03.
Appeared in Gale Encyclopedia of
Mental Disorders. Farmington Hills, MI: Gale Group, 2002
Bekhuis T. "Fatigue," pp. 399-403.
Bekhuis T. "Pain Disorder," pp. 713-16.
Bekhuis T, Ford-Martin P. "Self-Help Groups" [update of essay by
Paula Ford-Martin], pp. 876-880.
Appeared
in Magill's Encyclopedia of Social Science: Psychology [an ALA/RUSA Outstanding
Reference Source, 2004]. Pasadena, CA: Salem Press, 2003
Bekhuis T. "Coping: Terminal Illness," pp. 446-51.
Henderson JT, Bekhuis T.
"Madness: Historical Concepts" [update of essay by J. T. Henderson].
Ito TA, Miller N, Bekhuis T.
"Helping: Theoretical Perspectives" [update of essay by TA Ito &
N. Miller].
Appeared in Magill’s Medical Guide, Third Revised Edition. Pasadena, CA: Salem Press, 2004
Bekhuis T. “Artificial Skin” [sidebar for “Burns and Scalds” by Maria
Pacheco], p. 384.
Bekhuis T. “In the News: Link between Strep Throat and PANDAS” [sidebar for
“Strep Throat” by Connie Rizzo], p. 2463.
Bekhuis T. “Prostheses,” pp. 2129–33.
Bekhuis T. “Tremors,” pp. 2616–17.
SELECTED PRESENTATIONS and INVITED LECTURES
Bekhuis T. Exploring genetic and protein databases of interest to
evolutionary psychologists: Using Alzheimer's disease as a case study. Poster
presented at the annual meeting of the Human Behavior & Evolution Society,
Williamsburg, Virginia, June 2007.
Bekhuis T, Demner-Fushman D. Towards automating the initial screening phase
of a systematic review. Presenter, Lister Hill National Center for Biomedical
Communications, NLM, Bethesda, MD, July 2009.
Bekhuis T. Towards automating the initial screening phase of a systematic
review. Invited speaker, Department of Biomedical Informatics Lecture Series,
University of Pittsburgh, PA, September 2009.
Bekhuis T, Kreinacke M, Spallek H, Song M. Discovery of dentists’
information needs expressed in electronic peer communications: Plan for a
study. Poster presented at the NIDCR Trainee Day, NIH, Bethesda, MD, March
2010.
Bekhuis T, Demner-Fushman, D. Towards automating the initial screening
phase of a systematic review. Speaker, NLM Informatics Training Conference,
Denver, Colorado, June 2010.
Bekhuis T, Demner-Fushman D. Towards automating the initial screening phase
of a systematic review. Speaker, MEDINFO 2010: 13th World Congress on Medical
and Health Informatics, Cape Town, South Africa, September 2010.
Bekhuis T, Demner-Fushman D, Crowley RS. Research designs in Mesh and
Emtree: a comparative study of coverage. Podium presentation, AMIA Annual
Symposium 2012, Chicago, IL, November 3‑7, 2012.
Bekhuis T. An overview of a translational research
program. Invited speaker, DBMI Colloquium Series, University of Pittsburgh,
Pittsburgh, PA, October 25, 2013.
Ketchum A, Bekhuis T. Review
methods for exploring research topics: systematic research workflow. DBMI
presentation, University of Pittsburgh,
Pittsburgh, PA, January 24, 2014.
Bekhuis T. An overview of a translational research
program. Visiting Scholar, Medical University of South Carolina, Charleston,
SC, March 3, 2014.
Bekhuis T, Tseytlin E, Mitchell K, Stein CD, Frazier JJ. Content views for
a retrieval set of citations: an interactive Web-based prototype for librarians
and researchers. Speaker, MLA 2014 Annual Conference, 147-8. Chicago, IL, May
16-21, 2014.
Bekhuis T. A proposed decision-support system for systematic reviewers of
medical evidence [University Showcase]. Speaker, NLM Informatics Training
Conference, Pittsburgh, PA, June 17-18, 2014.
Bekhuis T. Speeding Translation of Research for Better Patient Care [about
the EDDA System]. Speaker, UPMC Enterprises, Pittsburgh, PA, July 23, 2015.
Schneider J, Bekhuis T, Tokede O, Kalenderian E, and Spallek H. Promoting
Interoperable Dental Terminologies. Poster presentation. Pittsburgh Biomedical
Informatics Training Program Retreat, Pittsburgh, PA, August 20, 2015.
http://dx.doi.org/10.6084/m9.figshare.1514987.
Bekhuis T, Tseytlin E, Faith A, Linkov F. A biomedical taxonomy of study
designs: a resource for information professionals who support systematic review
teams. Speaker, joint meeting of the Medical Library Association (MLA),
Canadian Health Libraries Association (CHLA/ABSC), and International Clinical
Librarian Conference (ICLC), Toronto, Canada, May 13-18, 2016. doi:
10.13140/RG.2.1.3531.4803. http://tinyurl.com/hcy83xq. [A
top contributed paper.]
Bekhuis T. Training in support of data-driven research: a qualitative study
of library classes in top NIH- and NSF-funded universities. Medical Library
Association (MLA) 2017 Annual Conference. Seattle, WA, May 26-31, 2017.
SOFTWARE, QUESTIONNAIRE & TAXONOMIES
Bekhuis T,
Mitchell KM, Tseytlin E. Evidence in Documents, Discovery, and Analytics (EDDA)
Group. EDDA Extensions for Binominal Text Classification (Topic Models and
Regex), released 16 May 2013. Freely available at https://marketplace.rapid-i.com/edda.
Bekhuis T, Kim K, Valappil B, Spallek H. PRIME Fissure Sealant
Questionnaire—US Version [questionnaire
in APA PsycTESTS database, by subscription]. American Psychological
Association (APA). 2014.
doi:
10.1037/t27847-000.
Bekhuis T, Tseytlin E. EDDA Study Designs Taxonomy, version 2.0
Machine-readable
files released July 16, 2016. Freely available for noncommercial use at http://bioportal.bioontology.org/ontologies/EDDA. Creative Commons Attribution-NonCommercial-ShareAlike 4.0
International License (CC BY-NC-SA 4.0).
PDF [111 pages]
released July 12, 2016. Freely available for noncommercial use via ResearchGate
at http://tinyurl.com/j6a73pd. Creative Commons Attribution-NonCommercial-ShareAlike 4.0
International License (CC BY-NC-SA 4.0). doi: 10.13140/RG.2.1.3769.2406/1.
Bekhuis T, Tseytlin E. EDDA Publication Types Taxonomy, version 2.0. Machine-readable
files released July 18, 2016. Freely available for noncommercial use at https://bioportal.bioontology.org/ontologies/EDDA_PT. Creative Commons Attribution-NonCommercial-ShareAlike 4.0
International License (CC BY-NC-SA 4.0).
INVENTIONS
NobleCoder Concept Recognition Software. Office of Technology
Management, University of Pittsburgh, Invention Disclosure No. 03597
EDDA System for Systematic Review Teams. Office of Technology
Management, University of Pittsburgh, Invention Disclosure No. 03608
EDDA Study Designs and Publications Taxonomy. Office of Technology
Management, University of Pittsburgh, Invention Disclosure No. 03953
SELECTED INDEXES
Bekhuis T, EDDA Analytics Group™. Library
workshops in support of data-driven research in top NIH and NSF-funded
universities. [Includes Resource Index and Subject Index
for workshop content. no. 00170205]. Pittsburgh, PA, USA: TCB Research &
Indexing LLC. February 2017. https://doi.org/10.13140/RG.2.2.10522.85445.
Bekhuis T. Subject Index for “Understanding
Altmetrics (Chapter Five)” in Meaningful Metrics by Robin Chin Roemer and
Rachel Borchardt. Pittsburgh, PA, USA:
TCB Research & Indexing LLC. April 2017. https://doi.org/ 10.13140/RG.2.2.28229.45284.
Bekhuis T. Subject Index for "The Rowling Case: A Proposed Standard
Analytic Protocol for Authorship Questions" by Patrick Juola. Pittsburgh, PA, USA: TCB Research & Indexing LLC. May 2017. https://doi.org/ 10.13140/RG.2.2.24387.40486
Bekhuis T. Subject Index for The Children of the Poor: A Classic Book on Child
Welfare by Jacob A. Riis. Pittsburgh, PA, USA: TCB Research & Indexing LLC. July 2017. https://doi.org/10.13140/RG.2.2.28900.68481
FUNDED RESEARCH
ACTIVE
Funding Agency: NIH/NIDCR
Grant/Contract No.: 1U01DE026135
(Clinical Trial Implementation Agreement)
Title
of Project: Decision Support System for Tobacco
Cessation
Principal Investigators: Heiko Spallek and Brad Rindal
Bekhuis Role in Gran Co-Investigator
Entire
Project Period: August
2016–July 2020
COMPLETED
Funding Agency: NSF
Program: Innovation
Corps (I-Corps) at Carnegie Mellon University
Team: EDDA
Analytics Group
Bekhuis Role: Lead
Period: September 2015–2016
Funding Agency: NIH/NLM
Grant/Contract No.: 5R00LM010943
Title
of Project: Screening
Nonrandomized Studies for Inclusion in Systematic Reviews of Evidence
Principal Investigator: Tanja Bekhuis
Bekhuis Role in Grant: Principal Investigator
Entire
Project Period: July
2012–December 2015
Funding Agency: NIH/NIDCR
Grant/Contract No.: 1R21DE021494
Title
of Project: Implementing
Research Findings and Evidence-Based Interventions into Real-World Dental
Practice Settings
Principal Investigator: Heiko Spallek
Bekhuis Role in Grant: Co-Investigator
Entire
Project Period: February
2011–January 2013
Funding Agency: NIH/NLM Pathway to Independence Award
Grant/Contract No.: 1K99LM010943
Title
of Project: Screening
Nonrandomized Studies for Inclusion in Systematic Reviews of Evidence
Principal Investigator: Tanja Bekhuis
Bekhuis Role in Grant: Principal Investigator
Entire Project Period: July 2011–June 2012
OTHER ACTIVITIES
Journal Editorial Board Member
JMLA:
Journal of the Medical Library Association (past appointment)
Journal or Conference Referee
American
Educational Research Association
Personality
& Individual Differences
Health
Education Research
AMIA
2013 Summit on Translational Bioinformatics
Health
Information Science and Systems
The
Journal of the American Dental Association
Journal
of Biomedical Informatics
Journal
of the American Medical Informatics Association
2015 International Workshop on Biomedical and Health Informatics
in conjunction with IEEE International Conference on Bioinformatics and
Biomedicine
Extramural Grant Reviewer
National
Research Council, National Academies Graduate Fellowship Selection Committee
MEMBERSHIPS
Academy
of Health Information Professionals (AHIP), Distinguished Member
Beta
Phi Mu, International Library and Information Studies Honor Society
Phi Kappa Phi Honor Society
National
Association of Science Writers
American
Medical Writers Association
Medical
Library Association
Special
Libraries Association
Cochrane
Oral Health Group
Cochrane
Information Retrieval Methods Group
American
Society for Indexing
This is an abridged version of an academic
CV.
If you would like an extended version, please contact:
If you would like an extended version, please contact:
tanja.bekhuis@tcbinfosci.com
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